recipe komb

Characterizing metagenomes using K-Core decomposition

Homepage:

https://gitlab.com/treangenlab/komb

License:

GPL-3.0-or-later

Recipe:

/komb/meta.yaml

package komb

Versions:

1.0-5,  1.0-4,  1.0-3,  1.0-2,  1.0-0

Depends:

• abyss 2.0.2.*

• bifrost >=1.0.5

• bowtie2 >=2.3.5.1

• igraph 0.8.*

• igraph >=0.8.3,<0.9.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.12,<1.3.0a0

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• zlib >=1.2.12,<1.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install komb

and update with:

conda update komb

or use the docker container:

docker pull quay.io/biocontainers/komb:<tag>

(see komb/tags for valid values for <tag>)

Download stats

Link to this page

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