recipe komb

Characterizing metagenomes using K-Core decomposition

Homepage

https://gitlab.com/treangenlab/komb

License

GPL-3.0-or-later

Recipe

/komb/meta.yaml

package komb

Versions

1.0-3,  1.0-2,  1.0-0

Depends

• abyss >=2.0.2

• bifrost >=1.0.5

• bowtie2 >=2.3.5.1

• igraph 0.8.*

• igraph >=0.8.3,<0.9.0a0

• libgcc-ng >=9.3.0

• libstdcxx-ng >=9.3.0

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install komb

and update with:

conda update komb

or use the docker container:

docker pull quay.io/biocontainers/komb:<tag>

(see komb/tags for valid values for <tag>)

Download stats

Link to this page

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