recipe komb

Characterizing metagenomes using K-Core decomposition

Homepage:

https://gitlab.com/treangenlab/komb

License:

GPL-3.0-or-later

Recipe:

/komb/meta.yaml

package komb

versions:

1.0-5,  1.0-4,  1.0-3,  1.0-2,  1.0-0

depends abyss:

2.0.2.*

depends bifrost:

>=1.0.5

depends bowtie2:

>=2.3.5.1

depends igraph:

0.8.*

depends igraph:

>=0.8.3,<0.9.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.12,<1.3.0a0

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends zlib:

>=1.2.12,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install komb

and update with::

   mamba update komb

To create a new environment, run:

mamba create --name myenvname komb

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/komb:<tag>

(see `komb/tags`_ for valid values for ``<tag>``)

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