recipe kosudoku

kosudoku: a suite to rapidly create whole genome knockout collections for microorganisms

Homepage:

https://github.com/tuncK/kosudoku

License:

Princeton University Copyright Notice and Limited License

Recipe:

/kosudoku/meta.yaml

package kosudoku

versions:

1.0-0

depends biopython:

depends bowtie2:

depends matplotlib-base:

depends numpy:

<1.24

depends python:

>=3.5

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install kosudoku

and update with::

   mamba update kosudoku

To create a new environment, run:

mamba create --name myenvname kosudoku

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/kosudoku:<tag>

(see `kosudoku/tags`_ for valid values for ``<tag>``)

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