recipe koverage

Read-coverage statistics pipelines for multiple samples

Homepage:

https://github.com/beardymcjohnface/Koverage

License:

MIT

Recipe:

/koverage/meta.yaml

package koverage

versions:

0.1.11-0,  0.1.10-0,  0.1.9-0,  0.1.8-0,  0.1.7-0,  0.1.6-0

depends click:

>=8.1.3

depends datapane:

>=0.16.7

depends metasnek:

>=0.0.8

depends numpy:

>=1.24.3

depends plotly:

>=5.15.0

depends pulp:

<2.8

depends python:

>=3.10

depends pyyaml:

>=6.0

depends snakemake:

>=7.14.0,<8

depends snaketool-utils:

>=0.0.4

depends zstandard:

>=0.21.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install koverage

and update with::

   mamba update koverage

To create a new environment, run:

mamba create --name myenvname koverage

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/koverage:<tag>

(see `koverage/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/koverage/README.html)