recipe kraken2

Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.

Homepage

https://ccb.jhu.edu/software/kraken2/

License

GPLv3

Recipe

/kraken2/meta.yaml

Links

biotools: kraken2, doi: 10.1186/gb-2014-15-3-r46

package kraken2

Versions

2.1.1-0,  2.1.0-0,  2.0.9beta-0,  2.0.8_beta-2,  2.0.8_beta-1,  2.0.8_beta-0,  2.0.7_beta-3,  2.0.7_beta-2,  2.0.7_beta-1, 

2.1.1-0,  2.1.0-0,  2.0.9beta-0,  2.0.8_beta-2,  2.0.8_beta-1,  2.0.8_beta-0,  2.0.7_beta-3,  2.0.7_beta-2,  2.0.7_beta-1,  2.0.7_beta-0

Depends

• _openmp_mutex * *_gnu

• blast

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• perl >=5.26.2,<5.26.3.0a0

• rsync

• tar

• wget

Required By

• gridss

• bohra

• nullarbor

• bracken

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kraken2

and update with:

conda update kraken2

or use the docker container:

docker pull quay.io/biocontainers/kraken2:<tag>

(see kraken2/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kraken2/README.html)