recipe kraken2

Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.

Homepage:

https://ccb.jhu.edu/software/kraken2/

License:

GPLv3

Recipe:

/kraken2/meta.yaml

Links:

biotools: kraken2, doi: 10.1186/gb-2014-15-3-r46

package kraken2

Versions:

2.1.2-2,  2.1.2-1,  2.1.2-0,  2.1.1-1,  2.1.1-0,  2.1.0-0,  2.0.9beta-0,  2.0.8_beta-2,  2.0.8_beta-1, 

2.1.2-2,  2.1.2-1,  2.1.2-0,  2.1.1-1,  2.1.1-0,  2.1.0-0,  2.0.9beta-0,  2.0.8_beta-2,  2.0.8_beta-1,  2.0.8_beta-0,  2.0.7_beta-3,  2.0.7_beta-2,  2.0.7_beta-1,  2.0.7_beta-0

Depends:

• _openmp_mutex * *_gnu

• blast

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• perl >=5.32.1,<5.33.0a0 *_perl5

• rsync

• tar

• wget

Required By:

• metawrap-mg

• hocort

• bohra

• nullarbor

• bracken

• aquamis

• etoki

• quantpi

• gridss

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install kraken2

and update with:

conda update kraken2

or use the docker container:

docker pull quay.io/biocontainers/kraken2:<tag>

(see kraken2/tags for valid values for <tag>)

Download stats

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