- recipe kraken2
Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
- Homepage:
- Developer docs:
- License:
GPLv3
- Recipe:
- Links:
biotools: kraken2, doi: 10.1186/gb-2014-15-3-r46, doi: 10.1186/s13059-019-1891-0
- package kraken2¶
- versions:
2.1.3-3
,2.1.3-2
,2.1.3-1
,2.1.3-0
,2.1.2-4
,2.1.2-3
,2.1.2-2
,2.1.2-1
,2.1.2-0
,2.1.3-3
,2.1.3-2
,2.1.3-1
,2.1.3-0
,2.1.2-4
,2.1.2-3
,2.1.2-2
,2.1.2-1
,2.1.2-0
,2.1.1-1
,2.1.1-0
,2.1.0-0
,2.0.9beta-0
,2.0.8_beta-2
,2.0.8_beta-1
,2.0.8_beta-0
,2.0.7_beta-3
,2.0.7_beta-2
,2.0.7_beta-1
,2.0.7_beta-0
- depends _openmp_mutex:
>=4.5
- depends blast:
- depends libgcc:
>=12
- depends libstdcxx:
>=12
- depends libzlib:
>=1.2.13,<2.0a0
- depends perl:
>=5.32.1,<5.33.0a0 *_perl5
- depends python:
- depends rsync:
- depends tar:
- depends wget:
- depends zlib:
- requirements:
- additional platforms:
linux-aarch64
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install kraken2 and update with:: mamba update kraken2
To create a new environment, run:
mamba create --name myenvname kraken2
with
myenvname
being a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/kraken2:<tag> (see `kraken2/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kraken2/README.html)