recipe kronos

Kronos is a highly flexible Python-based software tool that mainly enables bioinformatics developers, i.e. bioinformaticians who develop workflows for analyzing genomic data, to quickly make a workflow.

Homepage:

https://github.com/jtaghiyar/kronos

Documentation:

https://kronos.readthedocs.io/en/latest/

License:

MIT / MIT

Recipe:

/kronos/meta.yaml

package kronos

(downloads) docker_kronos

versions:

2.3.0-1,  2.3.0-0

depends python:

<3

depends pyyaml:

>=3.11

depends ruffus:

2.4.1

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install kronos

and update with::

   mamba update kronos

To create a new environment, run:

mamba create --name myenvname kronos

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/kronos:<tag>

(see `kronos/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kronos/README.html)