recipe kseqpp

C++11 re-implementation of kseq by Heng Li

Homepage:

https://github.com/cartoonist/kseqpp

License:

MIT / MIT

Recipe:

/kseqpp/meta.yaml

The goal for re-implementation of kseq is providing modern API and resource management while preserving its flexibility and performance. Like original kseq, this parser is based on generic stream buffer and works with different file types.

package kseqpp

(downloads) docker_kseqpp

versions:

1.1.2-0,  1.1.1-1,  1.1.1-0,  1.0.0-3,  1.0.0-2,  1.0.0-1,  1.0.0-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install kseqpp

and update with::

   mamba update kseqpp

To create a new environment, run:

mamba create --name myenvname kseqpp

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/kseqpp:<tag>

(see `kseqpp/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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