recipe kwip

kWIP implements a de novo, alignment free measure of sample genetic dissimilarity

Homepage

https://github.com/kdmurray91/kWIP

License

GNU General Public License version 3

Recipe

/kwip/meta.yaml

Links

biotools: kWIP, doi: https://doi.org/10.1371/journal.pcbi.1005727

package kwip

(downloads) docker_kwip

Versions

0.2.0-30.2.0-20.2.0-10.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kwip

and update with:

conda update kwip

or use the docker container:

docker pull quay.io/biocontainers/kwip:<tag>

(see kwip/tags for valid values for <tag>)

Notes

The k-mer Weighted Inner Product (kWIP) implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. It is able to calculate the genetic dissimilarity between samples without any reference genome, and without assembling one.