recipe labrat

A package to quantify changes in alternative polyadenylation isoform abundance using RNAseq data

Homepage:

https://github.com/TaliaferroLab/LABRAT

License:

MIT / MIT

Recipe:

/labrat/meta.yaml

Links:

https: :https:`//bmcgenomics.biomedcentral.com/articles/10.1186/s12864-021-07781-1`

package labrat

Versions:

0.3.0-1,  0.3.0-0,  0.2.2-0

Depends:

• biopython >=1.76

• gffutils >=0.9

• numpy >=1.15.4

• pandas >=1.0

• python >=3.6

• salmon 0.14.*

• scipy >=1.3.0

• statsmodels >=0.10

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install labrat

and update with:

conda update labrat

or use the docker container:

docker pull quay.io/biocontainers/labrat:<tag>

(see labrat/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/labrat/README.html)