recipe last

LAST finds similar regions between sequences, and aligns them.

Homepage

http://last.cbrc.jp/

License

GPL / GPL-3.0-or-later

Recipe

/last/meta.yaml

Links

biotools: last

LAST finds similar regions between sequences, and aligns them. It is designed for comparing large datasets to each other (e.g. vertebrate genomes and/or large numbers of DNA reads).

package last

Versions

1060-0, 1047-0, 1021-0, 992-0, 982-0, 963-1, 963-0, 941-2, 941-0, 876-0, 874-3, 874-2, 874-1, 874-0, 847-0, 719-2, 719-1, 638-6, 638-5, 638-4, 638-3, 638-2, 638-1, 490-4, 490-3, 490-2, 490-1

Depends

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• parallel

• pillow

• python

• zlib >=1.2.11,<1.3.0a0

Required By

• dammit

• nanosim-h

• lamassemble

• shmlast

• magpurify

• nanosim

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install last

and update with:

conda update last

or use the docker container:

docker pull quay.io/biocontainers/last:<tag>

(see last/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/last/README.html)