recipe last

LAST finds & aligns related regions of sequences.

Homepage

https://gitlab.com/mcfrith/last

License

GPL / GPL-3.0-or-later

Recipe

/last/meta.yaml

Links

biotools: last

LAST finds & aligns related regions of sequences. It is designed for moderately large data (e.g. genomes, DNA reads, proteomes). It's especially good at: finding rearrangements and recombinations; finding DNA-versus-protein related regions; unusual data like AT-rich DNA; sensitive DNA-DNA search.

package last

Versions

1238-0,  1219-0,  1205-1,  1205-0,  1186-0,  1060-0,  1047-0,  1021-0,  992-0, 

1238-0,  1219-0,  1205-1,  1205-0,  1186-0,  1060-0,  1047-0,  1021-0,  992-0,  982-0,  963-1,  963-0,  941-2,  941-0,  876-0,  874-4,  874-3,  874-2,  874-1,  874-0,  847-0,  719-2,  719-1,  638-6,  638-5,  638-4,  638-3,  638-2,  638-1,  490-6,  490-5,  490-4,  490-3,  490-2,  490-1

Depends

• libgcc-ng >=9.3.0

• libstdcxx-ng >=9.3.0

• parallel

• pillow

• python

• zlib >=1.2.11,<1.3.0a0

Required By

• lamassemble

• shmlast

• nanosim

• dammit

• magpurify

• nanosim-h

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install last

and update with:

conda update last

or use the docker container:

docker pull quay.io/biocontainers/last:<tag>

(see last/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/last/README.html)