recipe ldblockshow

a tool for showing linkage disequilibrium heatmaps from variant call format (VCF) files

Homepage:

https://github.com/BGI-shenzhen/LDBlockShow

License:

MIT

Recipe:

/ldblockshow/meta.yaml

Links:

biotools: ldblockshow

package ldblockshow

(downloads) docker_ldblockshow

versions:
1.40-3,  1.40-2,  1.40-1,  1.40-0,  1.38-0,  1.37-0,  1.36-0,  1.35-0,  1.34-0, 

1.40-3,  1.40-2,  1.40-1,  1.40-0,  1.38-0,  1.37-0,  1.36-0,  1.35-0,  1.34-0,  1.33-0,  1.32-0,  1.31-0,  1.27-0,  1.25-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends perl-svg:

depends plink:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ldblockshow

and update with::

   mamba update ldblockshow

To create a new environment, run:

mamba create --name myenvname ldblockshow

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ldblockshow:<tag>

(see `ldblockshow/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ldblockshow/README.html)