recipe lefse

LDA Effect Size (LEfSe) (Segata et. al 2010) is an algorithm for high-dimensional biomarker discovery and explanation that identifies genomic features (genes, pathways, or taxa) characterizing the differences between two or more biological conditions.

Homepage

https://bitbucket.org/nsegata/lefse

License

Custom

Recipe

/lefse/meta.yaml

package lefse

(downloads) docker_lefse

Versions

1.0.8.post1-2, 1.0.8.post1-1, 1.0.8.post1-0, 1.0.7.post1-0, 1.0.7-2, 1.0.7-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install lefse

and update with:

conda update lefse

or use the docker container:

docker pull quay.io/biocontainers/lefse:<tag>

(see lefse/tags for valid values for <tag>)

Notes

Prefix with ‘lefse-‘’ some script names that are rather generic: ‘format_input.py’, ‘plot_cladogram.py’, ‘plot_features.py’, ‘plot_res.py’.