recipe leviosam

lift-over of alignments for variant-aware references

Homepage:

https://github.com/alshai/levioSAM

License:

MIT

Recipe:

/leviosam/meta.yaml

package leviosam

versions:

5.2.1-2,  5.2.1-1,  5.2.1-0,  3.1.1-0,  0.5.1-1,  0.5.1-0,  0.5.0-0,  0.4.0-1,  0.4.0-0, 

5.2.1-2,  5.2.1-1,  5.2.1-0,  3.1.1-0,  0.5.1-1,  0.5.1-0,  0.5.0-0,  0.4.0-1,  0.4.0-0,  0.3.1.2-0

depends htslib:

>=1.17,<1.22.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends sdsl-lite:

>=2.1.1

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install leviosam

and update with::

   mamba update leviosam

To create a new environment, run:

mamba create --name myenvname leviosam

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/leviosam:<tag>

(see `leviosam/tags`_ for valid values for ``<tag>``)

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