recipe leviosam2

Fast and accurate coordinate conversion between assemblies.

Homepage:

https://github.com/milkschen/leviosam2

Documentation:

https://github.com/milkschen/leviosam2/blob/v0.5.0/README.md

License:

MIT / MIT

Recipe:

/leviosam2/meta.yaml

Links:

doi: 10.1093/bioinformatics/btab396, doi: 10.1101/2022.04.27.489683

package leviosam2

versions:

0.5.0-0,  0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.0-2,  0.3.0-1,  0.3.0-0,  0.2.2-1,  0.2.2-0, 

0.5.0-0,  0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.0-2,  0.3.0-1,  0.3.0-0,  0.2.2-1,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.0-0

depends htslib:

>=1.11

depends htslib:

>=1.21,<1.22.0a0

depends libgcc:

>=12

depends libstdcxx:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends python:

>=3.6

depends sdsl-lite:

>=2.1.1

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install leviosam2

and update with::

   mamba update leviosam2

To create a new environment, run:

mamba create --name myenvname leviosam2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/leviosam2:<tag>

(see `leviosam2/tags`_ for valid values for ``<tag>``)

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