recipe lexmapr

A Lexicon and Rule-Based Tool for Translating Short Biomedical Specimen Descriptions into Semantic Web Ontology Terms

Homepage:

https://github.com/LexMapr/lexmapr

License:

GPL-3.0

Recipe:

/lexmapr/meta.yaml

package lexmapr

versions:

0.7.1-1,  0.7.1-0,  0.7.0-0,  0.6.1-1,  0.6.1-0,  0.6.0-0,  0.5.1-0,  0.5.0-0,  0.4.0-0, 

0.7.1-1,  0.7.1-0,  0.7.0-0,  0.6.1-1,  0.6.1-0,  0.6.0-0,  0.5.1-0,  0.5.0-0,  0.4.0-0,  0.3.0-0,  0.2.0-0,  0.1.4-0,  0.1.3-0,  0.1.2-0,  0.1.1-0,  0.1.0-0

depends inflection:

depends nltk:

3.4.5.*

depends nltk_data:

depends python:

>=3.6,<3.7.0a0 *_cpython

depends python-dateutil:

depends python_abi:

3.6.* *_cp36m

depends rdflib:

depends wikipedia:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install lexmapr

and update with::

   mamba update lexmapr

To create a new environment, run:

mamba create --name myenvname lexmapr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/lexmapr:<tag>

(see `lexmapr/tags`_ for valid values for ``<tag>``)

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