- recipe liana
LIANA+: a one-stop-shop framework for cell-cell communication
- Homepage:
- License:
GPL-3.0-or-later
- Recipe:
- package liana¶
- versions:
1.4.0-0- depends anndata:
>=0.7.4- depends cell2cell:
- depends corneto:
- depends cvxpy:
>=1.4,<2- depends cylp:
>=0.91.5,<0.92.0- depends decoupler:
>=1.4.0- depends docrep:
>=0.3.1- depends mofapy2:
>=0.7.0- depends mofax:
- depends mudata:
- depends muon:
- depends numba:
>=0.54.0- depends omnipath:
>=1.0.6- depends plotnine:
>=0.10.0- depends pre-commit:
>=3.0.0- depends pydeseq2:
>=0.3.5- depends python:
>=3.8,<3.12- depends requests:
>=2.25.1,<3.0.0- depends scanpy:
>=1.8.0- depends tqdm:
>=4.0.0,<5.0.0- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install liana and update with:: mamba update liana
To create a new environment, run:
mamba create --name myenvname liana
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/liana:<tag> (see `liana/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/liana/README.html)
