recipe lib-pod5

Python bindings for the POD5 file format.

Homepage:

https://github.com/nanoporetech/pod5-file-format

Documentation:

https://pod5-file-format.readthedocs.io/en/latest

License:

OTHER / MPL-2.0

Recipe:

/lib-pod5/meta.yaml

[![Documentation Status](https://readthedocs.org/projects/pod5-file-format/badge/?version=latest)](https://pod5-file-format.readthedocs.io/)

**Python bindings for the POD5 file format**

What does this project contain ------------------------------

This project contains the low-level core library (extension modules) for reading and writing POD5 files. This project forms the basis of the pure-python [pod5 package](https://github.com/nanoporetech/pod5-file-format) which is probably the project you want.

Documentation -------------

Full documentation is found at https://pod5-file-format.readthedocs.io

package lib-pod5

(downloads) docker_lib-pod5

versions:

0.3.15-0

depends numpy:

>=1.21.0

depends python:

>=3.8

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install lib-pod5

and update with::

   mamba update lib-pod5

To create a new environment, run:

mamba create --name myenvname lib-pod5

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/lib-pod5:<tag>

(see `lib-pod5/tags`_ for valid values for ``<tag>``)

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Link to this page

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