recipe libmaus2

collection of data structures and algorithms for NGS data

Homepage:

https://gitlab.com/german.tischler/libmaus2

License:

GPL3

Recipe:

/libmaus2/meta.yaml

package libmaus2

versions:

2.0.810-5,  2.0.810-4,  2.0.810-3,  2.0.810-2,  2.0.777-1,  2.0.777-0,  2.0.774-1,  2.0.774-0,  2.0.772-1, 

2.0.810-5,  2.0.810-4,  2.0.810-3,  2.0.810-2,  2.0.777-1,  2.0.777-0,  2.0.774-1,  2.0.774-0,  2.0.772-1,  2.0.772-0,  2.0.760-0

depends boost-cpp:

>=1.78.0,<1.78.1.0a0

depends libcurl:

>=8.7.1,<9.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends snappy:

1.1.8.*

depends snappy:

>=1.1.8,<2.0a0

depends staden_io_lib:

>=1.14.14

depends staden_io_lib:

>=1.14.14,<1.15.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install libmaus2

and update with::

   mamba update libmaus2

To create a new environment, run:

mamba create --name myenvname libmaus2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/libmaus2:<tag>

(see `libmaus2/tags`_ for valid values for ``<tag>``)

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