recipe libsbml

LibSBML is a free, open-source programming library to help you read, write, manipulate, translate, and validate SBML files and data streams.

Homepage:

http://sbml.org/Software/libSBML

License:

LGPL

Recipe:

/libsbml/meta.yaml

package libsbml

versions:

5.20.4-2,  5.20.4-1,  5.20.4-0,  5.18.0-10,  5.18.0-9,  5.18.0-8,  5.18.0-7,  5.18.0-6,  5.18.0-5, 

5.20.4-2,  5.20.4-1,  5.20.4-0,  5.18.0-10,  5.18.0-9,  5.18.0-8,  5.18.0-7,  5.18.0-6,  5.18.0-5,  5.18.0-4,  5.18.0-3,  5.18.0-2,  5.18.0-1,  5.18.0-0

depends bzip2:

>=1.0.8,<2.0a0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libxml2:

>=2.12,<2.13.0a0

depends libzlib:

>=1.3.1,<2.0a0

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install libsbml

and update with::

   mamba update libsbml

To create a new environment, run:

mamba create --name myenvname libsbml

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/libsbml:<tag>

(see `libsbml/tags`_ for valid values for ``<tag>``)

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