recipe lightassembler

Lightweight assembly algorithm designed to be executed on a desktop machine. It uses a pair of cache oblivious Bloom filters, one holding a uniform sample of g-spaced sequenced k-mers and the other holding k-mers classified as likely correct, using a simple statistical test.

Homepage:https://github.com/SaraEl-Metwally/LightAssembler
License:GPL
Recipe:/lightassembler/meta.yaml
Links:biotools: LightAssembler, doi: 10.1093/bioinformatics/btw470
package lightassembler

(downloads) docker_lightassembler

Versions:

1.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install lightassembler

and update with:

conda update lightassembler

or use the docker container:

docker pull quay.io/biocontainers/lightassembler:<tag>

(see lightassembler/tags for valid values for <tag>)