lightassembler

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Lightweight assembly algorithm designed to be executed on a desktop machine. It uses a pair of cache oblivious Bloom filters, one holding a uniform sample of g-spaced sequenced k-mers and the other holding k-mers classified as likely correct, using a simple statistical test.

Home https://github.com/SaraEl-Metwally/LightAssembler
Versions 1.0
License GPL
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/lightassembler
Links biotools: LightAssembler, doi: 10.1093/bioinformatics/btw470

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install lightassembler

and update with:

conda update lightassembler

docker

A Docker container is available at https://quay.io/repository/biocontainers/lightassembler.