Lightweight assembly algorithm designed to be executed on a desktop machine. It uses a pair of cache oblivious Bloom filters, one holding a uniform sample of g-spaced sequenced k-mers and the other holding k-mers classified as likely correct, using a simple statistical test.
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install lightassembler
and update with:
conda update lightassembler
or use the docker container:
docker pull quay.io/biocontainers/lightassembler:<tag>
(see lightassembler/tags for valid values for