recipe lightassembler

Lightweight assembly algorithm designed to be executed on a desktop machine. It uses a pair of cache oblivious Bloom filters, one holding a uniform sample of g-spaced sequenced k-mers and the other holding k-mers classified as likely correct, using a simple statistical test.

Homepage

https://github.com/SaraEl-Metwally/LightAssembler

License

GPL

Recipe

/lightassembler/meta.yaml

Links

biotools: LightAssembler, doi: 10.1093/bioinformatics/btw470

package lightassembler

(downloads) docker_lightassembler

Versions

1.0-0

Depends libstdcxx-ng

>=4.9

Depends libtool

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install lightassembler

and update with:

conda update lightassembler

or use the docker container:

docker pull quay.io/biocontainers/lightassembler:<tag>

(see lightassembler/tags for valid values for <tag>)