recipe lisa2

Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data. X. Shirley Liu Lab, 2020

Homepage:

https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-1934-6

License:

MIT

Recipe:

/lisa2/meta.yaml

package lisa2

versions:

2.3.2-1,  2.3.2-0,  2.3.1-0,  2.3.0-0

depends h5py:

>=2

depends numpy:

>=1.17,<2

depends python:

>=3.5

depends scikit-learn:

>=0.22,<2

depends scipy:

>=1.4,<2

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install lisa2

and update with::

   mamba update lisa2

To create a new environment, run:

mamba create --name myenvname lisa2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/lisa2:<tag>

(see `lisa2/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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