recipe locidex

Locidex: Common search engine for similarity based typing applications

Homepage:

https://pypi.org/project/locidex/

Developer docs:

https://github.com/phac-nml/locidex

License:

Apache-2.0

Recipe:

/locidex/meta.yaml

package locidex

versions:

0.1.2-0,  0.1.1-1,  0.1.1-0

depends biopython:

>=1.83

depends blast:

>=2.9.0

depends mafft:

depends numba:

>=0.57.1

depends numpy:

depends pandas:

>=2.0.2

depends pyrodigal:

>=3.0

depends pytables:

>=3.8

depends python:

>=3.8,<4

depends six:

>=1.16

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install locidex

and update with::

   mamba update locidex

To create a new environment, run:

mamba create --name myenvname locidex

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/locidex:<tag>

(see `locidex/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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