recipe lollipop

A tool for Deconvolution for Wastewater Genomics

Homepage:

https://github.com/cbg-ethz/LolliPop

License:

GPL3 / GNU General Public License v3 or later (GPLv3+)

Recipe:

/lollipop/meta.yaml

Links:

biotools: lollipop, doi: 10.1101/2022.11.02.22281825

package lollipop

versions:

0.5.0-0,  0.4.1-0,  0.4.0-0,  0.3.0-1,  0.3.0-0,  0.2.0-0,  0.1.0-0

depends bcbio-gff:

depends click:

depends click-option-group:

depends numpy:

depends pandas:

depends python:

>=3.10

depends ruamel.yaml:

>=0.18

depends scipy:

depends strictyaml:

depends tqdm:

depends zstandard:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install lollipop

and update with::

   mamba update lollipop

To create a new environment, run:

mamba create --name myenvname lollipop

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/lollipop:<tag>

(see `lollipop/tags`_ for valid values for ``<tag>``)

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