recipe longqc

LongQC is a tool for the data quality control of the PacBio and ONT long reads

Homepage:

https://github.com/yfukasawa/LongQC

License:

MIT

Recipe:

/longqc/meta.yaml

package longqc

Versions:

1.2.0c-0

Depends:

• h5py

• jinja2

• matplotlib-base >=2.1.2

• minimap2-coverage

• numpy

• pandas >=0.24.0

• pysam

• python >=3

• python-edlib

• scikit-learn

• scipy

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install longqc

and update with:

conda update longqc

or use the docker container:

docker pull quay.io/biocontainers/longqc:<tag>

(see longqc/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/longqc/README.html)