recipe lrsim

Simulator for 10X Genomics Linked Reads

Homepage:

https://github.com/aquaskyline/LRSIM

License:

MIT

Recipe:

/lrsim/meta.yaml

Links:

doi: 10.1016/j.csbj.2017.10.002, doi: 10.5281/zenodo.808913

package lrsim

versions:

1.0-0

depends gsl:

>=2.7,<2.8.0a0

depends htslib:

>=1.18,<1.22.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends ncurses:

>=6.4,<7.0a0

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends perl-inline:

depends perl-inline-c:

depends perl-math-random:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install lrsim

and update with::

   mamba update lrsim

To create a new environment, run:

mamba create --name myenvname lrsim

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/lrsim:<tag>

(see `lrsim/tags`_ for valid values for ``<tag>``)

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