recipe ls-gkm

gkm-SVM, a sequence-based method for predicting regulatory DNA elements, is a useful tool for studying gene regulatory mechanisms. In continuous efforts to improve the method, new software, LS-GKM, is introduced. It offers much better scalability and provides further advanced gapped k-mer based kernel functions. As a result, LS-GKM achieves considerably higher accuracy than the original gkm-SVM.

Homepage

https://github.com/Dongwon-Lee/lsgkm

License

GPL3

Recipe

/ls-gkm/meta.yaml

package ls-gkm

(downloads) docker_ls-gkm

Versions

0.0.1-10.0.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ls-gkm

and update with:

conda update ls-gkm

or use the docker container:

docker pull quay.io/biocontainers/ls-gkm:<tag>

(see ls-gkm/tags for valid values for <tag>)