recipe ltr_harvest_parallel

Perl wrapper for parallel execution of LTR_harvest

Homepage:

https://github.com/oushujun/EDTA/tree/8980f498f05ad63dbffa3241842d3d38e939531b/bin/LTR_HARVEST_parallel

License:

MIT / MIT

Recipe:

/ltr_harvest_parallel/meta.yaml

Links:

doi: 10.1186/s13059-019-1905-y, doi: 10.1101/2022.10.09.511471

package ltr_harvest_parallel

(downloads) docker_ltr_harvest_parallel

versions:

1.1-1,  1.1-0

depends genometools-genometools:

depends perl:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ltr_harvest_parallel

and update with::

   mamba update ltr_harvest_parallel

To create a new environment, run:

mamba create --name myenvname ltr_harvest_parallel

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ltr_harvest_parallel:<tag>

(see `ltr_harvest_parallel/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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