recipe lukasa

Fast and accurate mapping of proteins against eukaryotic genomes

Homepage:

https://github.com/pvanheus/lukasa

License:

GPL / GPL-3.0

Recipe:

/lukasa/meta.yaml

Lukasa combines MetaEUK and spaln to rapidly identify matches between proteins and genomic contigs and accurately map the proteins to the identified regions. The output is GFF3, suitable for use in eukaryotic genome annotation.

package lukasa

versions:

0.15.0-0,  0.14.2-0,  0.14.1-0,  0.14.0-0,  0.13.2-0,  0.13.1-0,  0.13.0-0,  0.12.0-0,  0.11.0-0, 

0.15.0-0,  0.14.2-0,  0.14.1-0,  0.14.0-0,  0.13.2-0,  0.13.1-0,  0.13.0-0,  0.12.0-0,  0.11.0-0,  0.10.0-0,  0.0.8-1,  0.0.8-0,  0.0.7-1,  0.0.7-0,  0.0.6-0

depends cwltool:

depends metaeuk:

depends nodejs:

depends python:

depends samtools:

depends spaln:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install lukasa

and update with::

   mamba update lukasa

To create a new environment, run:

mamba create --name myenvname lukasa

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/lukasa:<tag>

(see `lukasa/tags`_ for valid values for ``<tag>``)

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