recipe lumpy-sv-minimal

A general probabilistic framework for structural variant discovery. This package contains only the lumpy executable

Homepage

https://github.com/arq5x/lumpy-sv

License

MIT

Recipe

/lumpy-sv-minimal/meta.yaml

package lumpy-sv-minimal

Versions

0.3.1-0

Depends

• htslib >=1.10.2,<1.11.0a0

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• zlib >=1.2.11,<1.3.0a0

Required By

• lumpy-sv

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install lumpy-sv-minimal

and update with:

conda update lumpy-sv-minimal

or use the docker container:

docker pull quay.io/biocontainers/lumpy-sv-minimal:<tag>

(see lumpy-sv-minimal/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/lumpy-sv-minimal/README.html)