recipe lusstr

Tool for converting NGS sequence data of forensic STR loci to various annotation styles

Homepage:

https://www.github.com/bioforensics/lusSTR

License:

BSD / BSD-3-Clause

Recipe:

/lusstr/meta.yaml

package lusstr

versions:

0.10-0,  0.9-0,  0.8-1,  0.8-0,  0.7-0,  0.6.4-0,  0.5-0,  0.4-0,  0.3-0, 

0.10-0,  0.9-0,  0.8-1,  0.8-0,  0.7-0,  0.6.4-0,  0.5-0,  0.4-0,  0.3-0,  0.2.1-0,  0.1.1-0

depends matplotlib-base:

>=3.5.3

depends numpy:

1.26.4

depends openpyxl:

>=3.0.6

depends pandas:

>=1.0,<2.0

depends python:

>=3,<3.12

depends pyyaml:

>=6.0

depends snakemake-minimal:

>=7.22.0,<8.0

depends streamlit:

>=1.31.0

depends streamlit_option_menu:

>=0.3.13

depends xlrd:

>=1.0,<2.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install lusstr

and update with::

   mamba update lusstr

To create a new environment, run:

mamba create --name myenvname lusstr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/lusstr:<tag>

(see `lusstr/tags`_ for valid values for ``<tag>``)

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