recipe macrel

A pipeline for AMP (antimicrobial peptide) prediction

Homepage:

https://github.com/BigDataBiology/macrel

License:

MIT

Recipe:

/macrel/meta.yaml

Links:

doi: 10.7717/peerj.10555

Used for the prediction of AMPs in (meta)genomes.

package macrel

versions:

1.3.0-0,  1.2.0-1,  1.2.0-0,  1.1.0-1,  1.1.0-0,  1.0.1-0,  1.0.0-1,  1.0.0-0,  0.6.1-0, 

1.3.0-0,  1.2.0-1,  1.2.0-0,  1.1.0-1,  1.1.0-0,  1.0.1-0,  1.0.0-1,  1.0.0-0,  0.6.1-0,  0.6.0-0,  0.5.0-2,  0.5.0-1,  0.5.0-0,  0.4.0-0,  0.3.1-1,  0.3.1-0,  0.2-0

depends atomicwrites:

depends joblib:

<1.3.0

depends megahit:

depends ngless:

depends paladin:

depends pandas:

depends pyrodigal:

>=0.7.3

depends python:

depends scikit-learn:

<1.3.0

depends tzlocal:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install macrel

and update with::

   mamba update macrel

To create a new environment, run:

mamba create --name myenvname macrel

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/macrel:<tag>

(see `macrel/tags`_ for valid values for ``<tag>``)

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