recipe macrel

A pipeline for AMP (antimicrobial peptide) prediction

Homepage

https://github.com/BigDataBiology/macrel

License

GPLv3

Recipe

/macrel/meta.yaml

Links

doi: 10.1101/2019.12.17.880385

Used for the prediction of AMPs in (meta)genomes.

package macrel

Versions

1.0.0-0,  0.6.1-0,  0.6.0-0,  0.5.0-2,  0.5.0-1,  0.5.0-0,  0.4.0-0,  0.3.1-1,  0.3.1-0, 

1.0.0-0,  0.6.1-0,  0.6.0-0,  0.5.0-2,  0.5.0-1,  0.5.0-0,  0.4.0-0,  0.3.1-1,  0.3.1-0,  0.2-0

Depends

• atomicwrites

• libgcc-ng >=7.5.0

• megahit

• ngless

• paladin

• pandas

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• r-base

• r-essentials

• r-peptides

• rpy2

• scikit-learn

• tzlocal

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install macrel

and update with:

conda update macrel

or use the docker container:

docker pull quay.io/biocontainers/macrel:<tag>

(see macrel/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/macrel/README.html)