recipe macrel

A pipeline for AMP (antimicrobial peptide) prediction

Homepage

https://github.com/BigDataBiology/macrel

License

GPLv3

Recipe

/macrel/meta.yaml

Links

doi: 10.1101/2019.12.17.880385

Used for the prediction of AMPs in (meta)genomes.

package macrel

Versions

0.5.0-0,  0.4.0-0,  0.3.1-1,  0.3.1-0,  0.2-0

Depends

• libgcc-ng >=7.3.0

• megahit

• ngless

• paladin

• pandas

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• r-base

• r-essentials

• r-peptides

• rpy2

• scikit-learn

• tzlocal

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install macrel

and update with:

conda update macrel

or use the docker container:

docker pull quay.io/biocontainers/macrel:<tag>

(see macrel/tags for valid values for <tag>)

Link to this page

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