recipe macs2

Model Based Analysis for ChIP-Seq data

Homepage:

https://pypi.org/project/MACS2/

Documentation:

https://macs3-project.github.io/MACS/

Developer docs:

https://github.com/macs3-project/MACS/

License:

BSD / BSD-3-Clause

Recipe:

/macs2/meta.yaml

Links:

usegalaxy-eu: peakcalling_macs, biotools: macs, doi: 10.1186/gb-2008-9-9-r137

package macs2

versions:

2.2.9.1-2,  2.2.9.1-1,  2.2.9.1-0,  2.2.7.1-5,  2.2.7.1-4,  2.2.7.1-3,  2.2.7.1-2,  2.2.7.1-1,  2.2.7.1-0, 

2.2.9.1-2,  2.2.9.1-1,  2.2.9.1-0,  2.2.7.1-5,  2.2.7.1-4,  2.2.7.1-3,  2.2.7.1-2,  2.2.7.1-1,  2.2.7.1-0,  2.2.6-0,  2.2.5-0,  2.2.4-0,  2.1.4-0,  2.1.3.3-0,  2.1.3.2-0,  2.1.2-1,  2.1.2-0,  2.1.1.20160309-3,  2.1.1.20160309-2,  2.1.1.20160309-1,  2.1.1.20160309-0,  2.1.1-0,  2.1.0-0

depends libgcc:

>=13

depends numpy:

>=1.21,<3

depends numpy:

>=2.2.0,<3.0a0

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends r-base:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install macs2

and update with::

   mamba update macs2

To create a new environment, run:

mamba create --name myenvname macs2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/macs2:<tag>

(see `macs2/tags`_ for valid values for ``<tag>``)

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