recipe magetab-curation-scripts

Perl-based scripts for ArrayExpress and Expression Atlas curation of MAGE-TAB files

Homepage:

https://github.com/ebi-gene-expression-group/perl-curation-scripts

License:

APACHE / Apache Software License

Recipe:

/magetab-curation-scripts/meta.yaml

The scripts are used by ArrayExpress and Expression Atlas curators for validating and processing experiments and array designs in MAGE-TAB format.

package magetab-curation-scripts

(downloads) docker_magetab-curation-scripts

versions:

1.1.0-0,  1.0.0-0

depends perl:

depends perl-atlas-modules:

>=0.2.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install magetab-curation-scripts

and update with::

   mamba update magetab-curation-scripts

To create a new environment, run:

mamba create --name myenvname magetab-curation-scripts

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/magetab-curation-scripts:<tag>

(see `magetab-curation-scripts/tags`_ for valid values for ``<tag>``)

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Link to this page

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