recipe magmax

MAGmax is a robust tool for dereplicating MAGs through bin merging and reassembly.

Homepage:

https://github.com/soedinglab/MAGmax

License:

GPL / GPL-3.0

Recipe:

/magmax/meta.yaml

package magmax

versions:

1.0.0-0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends seqtk:

depends skani:

depends spades:

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install magmax

and update with::

   mamba update magmax

To create a new environment, run:

mamba create --name myenvname magmax

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/magmax:<tag>

(see `magmax/tags`_ for valid values for ``<tag>``)

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