recipe magneto

MAGNETO is an automated snakemake workflow dedicated to MAG reconstruction from metagenomic data.

Homepage:

https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto

Documentation:

https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto/-/wikis/home

License:

GPL3 / GPL-3.0-only

Recipe:

/magneto/meta.yaml

Links:

biotools: magneto, doi: 10.1128/msystems.00432-22

package magneto

(downloads) docker_magneto

versions:

1.2-0

depends click:

depends mamba:

depends pandas:

depends python:

>=3.7

depends pyyaml:

depends snakemake-minimal:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install magneto

and update with::

   mamba update magneto

To create a new environment, run:

mamba create --name myenvname magneto

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/magneto:<tag>

(see `magneto/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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