recipe maker

MAKER is a portable and easily configurable genome annotation pipeline.

Homepage

http://www.yandell-lab.org/software/maker.html

License

GPL3

Recipe

/maker/meta.yaml

Links

biotools: maker, usegalaxy-eu: maker

package maker

Versions

2.31.10-17,  2.31.10-16,  2.31.10-15,  2.31.10-14,  2.31.10-13,  2.31.10-12,  2.31.10-11,  2.31.10-10,  2.31.10-9, 

2.31.10-17,  2.31.10-16,  2.31.10-15,  2.31.10-14,  2.31.10-13,  2.31.10-12,  2.31.10-11,  2.31.10-10,  2.31.10-9,  2.31.10-8,  2.31.10-7,  2.31.10-6,  2.31.9-6,  2.31.9-3,  2.31.9-2,  2.31.9-1,  2.31.9-0

Depends

• augustus >=3.2.3

• blast 2.9.0.*

• exonerate

• infernal

• mir-prefer

• mpich

• perl >=5.26.2,<5.26.3.0a0

• perl-bioperl-core >=1.007002

• perl-bit-vector

• perl-dbd-pg

• perl-dbd-sqlite

• perl-dbi

• perl-file-which

• perl-forks

• perl-inline-c >=0.78

• perl-io-all

• perl-io-prompt

• perl-list-moreutils

• perl-perl-unsafe-signals

• perl-perlio-gzip

• postgresql

• repeatmasker

• rmblast 2.9.0.*

• snap

• snoscan

• trnascan-se 1.3.1

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install maker

and update with:

conda update maker

or use the docker container:

docker pull quay.io/biocontainers/maker:<tag>

(see maker/tags for valid values for <tag>)

Link to this page

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