recipe maker

MAKER is a portable and easily configurable genome annotation pipeline.

Homepage:

http://www.yandell-lab.org/software/maker.html

License:

GPL3

Recipe:

/maker/meta.yaml

Links:

biotools: maker, usegalaxy-eu: maker

package maker

versions:

3.01.03-2,  3.01.03-1,  3.01.03-0,  2.31.11-1,  2.31.11-0,  2.31.10-17,  2.31.10-16,  2.31.10-15,  2.31.10-14, 

3.01.03-2,  3.01.03-1,  3.01.03-0,  2.31.11-1,  2.31.11-0,  2.31.10-17,  2.31.10-16,  2.31.10-15,  2.31.10-14,  2.31.10-13,  2.31.10-12,  2.31.10-11,  2.31.10-10,  2.31.10-9,  2.31.10-8,  2.31.10-7,  2.31.10-6,  2.31.9-6,  2.31.9-3,  2.31.9-2,  2.31.9-1,  2.31.9-0

depends augustus:

>=3.2.3

depends blast:

2.9.0.*

depends evidencemodeler:

depends exonerate:

depends libgcc-ng:

>=9.4.0

depends mpich:

>=3.4.3,<4.0a0

depends perl:

>=5.26.2,<5.26.3.0a0

depends perl-bioperl-core:

>=1.007002

depends perl-bit-vector:

depends perl-dbd-pg:

depends perl-dbd-sqlite:

depends perl-dbi:

depends perl-forks:

depends perl-inline-c:

>=0.78

depends perl-io-all:

depends perl-io-prompt:

depends perl-perl-unsafe-signals:

depends perl-perlio-gzip:

depends postgresql:

depends rapsearch:

depends repeatmasker:

>=4.1.1

depends rmblast:

2.9.0.*

depends snap:

depends snoscan:

depends trnascan-se:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install maker

and update with::

   mamba update maker

To create a new environment, run:

mamba create --name myenvname maker

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/maker:<tag>

(see `maker/tags`_ for valid values for ``<tag>``)

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