recipe maker

MAKER is a portable and easily configurable genome annotation pipeline.

Homepage

http://www.yandell-lab.org/software/maker.html

License

GPL3

Recipe

/maker/meta.yaml

Links

biotools: maker

package maker

(downloads) docker_maker

Versions

2.31.10-14, 2.31.10-13, 2.31.10-12, 2.31.10-11, 2.31.10-10, 2.31.10-9, 2.31.10-8, 2.31.10-7, 2.31.10-6, 2.31.9-6, 2.31.9-3, 2.31.9-2, 2.31.9-1, 2.31.9-0

Depends augustus

>=3.2.3

Depends blast

Depends exonerate

Depends infernal

Depends libpq

>=11.3,<12.0a0

Depends mir-prefer

Depends mpich

>=3.2,<3.3.0a0

Depends perl

>=5.26.2,<5.26.3.0a0

Depends perl-bioperl-core

>=1.007002

Depends perl-bit-vector

Depends perl-dbd-pg

Depends perl-dbd-sqlite

Depends perl-dbi

Depends perl-file-which

Depends perl-forks

Depends perl-inline-c

>=0.78

Depends perl-io-all

Depends perl-io-prompt

Depends perl-list-moreutils

Depends perl-perl-unsafe-signals

Depends perl-perlio-gzip

Depends postgresql

Depends repeatmasker

Depends snap

Depends snoscan

Depends trnascan-se

1.3.1

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install maker

and update with:

conda update maker

or use the docker container:

docker pull quay.io/biocontainers/maker:<tag>

(see maker/tags for valid values for <tag>)