recipe mantis-msi2

MANTIS2 is a program developed for detecting microsatellite instability from paired-end BAM files

Homepage:

https://github.com/nh13/MANTIS2/

License:

GPL / GPL-3

Recipe:

/mantis-msi2/meta.yaml

MANTIS2 (Microsatellite Analysis for Normal-Tumor InStability) is a program developed for detecting microsatellite instability from paired-end BAM files. To perform analysis, the program needs a tumor BAM and a matched normal BAM file (produced using the same pipeline) to determine the instability score between the two samples within the pair. Longer reads (ideally, 100 bp or longer) are recommended, as shorter reads are unlikely to entirely cover the microsatellite loci, and will be discarded after failing the quality control filters. Originally developed and maintained here: https://github.com/OSU-SRLab/MANTIS.

package mantis-msi2

(downloads) docker_mantis-msi2

Versions:

2.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mantis-msi2

and update with:

conda update mantis-msi2

or use the docker container:

docker pull quay.io/biocontainers/mantis-msi2:<tag>

(see mantis-msi2/tags for valid values for <tag>)

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