recipe mapdamage2

mapDamage: tracking and quantifying damage patterns in ancient DNA sequences http://geogenetics.ku.dk/all_literature/mapdamage/

Homepage

https://github.com/ginolhac/mapDamage

License

MIT

Recipe

/mapdamage2/meta.yaml

package mapdamage2

Versions

2.2.1-0,  2.2.0-0,  2.1.1-1,  2.1.1-0,  2.1.0-0,  2.0.9-0,  2.0.8-0,  2.0.6-2,  2.0.6-1, 

2.2.1-0,  2.2.0-0,  2.1.1-1,  2.1.1-0,  2.1.0-0,  2.0.9-0,  2.0.8-0,  2.0.6-2,  2.0.6-1,  2.0.6-0

Depends

• pysam

• python >=3.5

• r-base >=4.0,<4.1.0a0

• r-gam

• r-ggplot2 >=2.1.0

• r-inline

• r-rcpp

• r-rcppgsl

• seqtk

Required By

• haystac

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mapdamage2

and update with:

conda update mapdamage2

or use the docker container:

docker pull quay.io/biocontainers/mapdamage2:<tag>

(see mapdamage2/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mapdamage2/README.html)