recipe mapdia

Performs essential data preprocessing, including novel retention time-based normalization method and a sequence of peptide/fragment selection steps, and more importantly, hierarchical model-based statistical significance analysis for multi-group comparisons under representative experimental designs.

Homepage:

http://sourceforge.net/projects/mapdia/.

License:

file

Recipe:

/mapdia/meta.yaml

Links:

biotools: MAPDIA, doi: 10.1016/j.jprot.2015.09.013

package mapdia

(downloads) docker_mapdia

versions:

3.1.0-6,  3.1.0-5,  3.1.0-4,  3.1.0-3,  3.1.0-2,  3.1.0-1,  3.1.0-0,  1.0-0

depends libgcc:

>=13

depends libstdcxx:

>=13

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mapdia

and update with::

   mamba update mapdia

To create a new environment, run:

mamba create --name myenvname mapdia

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mapdia:<tag>

(see `mapdia/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mapdia/README.html)