recipe mapseq

Open source metagenomic 16S/18S read classifier enabling comparative metagenomics.

Homepage:

https://github.com/jfmrod/MAPseq

License:

GPL / dual-licensed under GPL-3.0+ or BSD 2-clause

Recipe:

/mapseq/meta.yaml

Links:

doi: 10.1093/bioinformatics/btx517

package mapseq

versions:

2.1.1-1,  2.1.1-0,  2.1.1b-0,  2.1.1a-0,  2.1-0,  1.2.6-3,  1.2.6-2,  1.2.6-1,  1.2.6-0

depends blis:

depends curl:

depends gsl:

>=2.7,<2.8.0a0

depends libcxx:

>=15.0.7

depends libopenblas:

>=0.3.23,<1.0a0

depends libzlib:

>=1.2.13,<1.3.0a0

depends ncurses:

>=6.3,<7.0a0

depends openssl:

>=3.1.0,<4.0a0

depends readline:

>=8.2,<9.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mapseq

and update with::

   mamba update mapseq

To create a new environment, run:

mamba create --name myenvname mapseq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mapseq:<tag>

(see `mapseq/tags`_ for valid values for ``<tag>``)

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