recipe marbel

Marbel generates realistic in silico metatranscriptomic dataset based on specified parameters.

Homepage:

https://github.com/jlab/marbel

License:

Apache-2.0

Recipe:

/marbel/meta.yaml

package marbel

versions:

0.2.3-0

depends arviz:

depends biopython:

depends ete4:

depends joblib:

depends pandas:

depends polars:

depends progress:

depends pyarrow:

depends pymc:

depends pysam:

depends python:

depends requests:

depends typer:

depends typing-extensions:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install marbel

and update with::

   mamba update marbel

To create a new environment, run:

mamba create --name myenvname marbel

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/marbel:<tag>

(see `marbel/tags`_ for valid values for ``<tag>``)

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Link to this page

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