recipe marti

Metagenomic Analysis in Real Time

Homepage:

https://github.com/richardmleggett/MARTi

Documentation:

https://marti.readthedocs.io

License:

MIT / MIT

Recipe:

/marti/meta.yaml

MARTi is a software package designed for performing real-time analysis of metagenomic samples using nanopore sequencing.If you’re not working in real-time, MARTi may still be a quick and easy analysis solution for you. And if you’re not using nanopore sequencing, you may still benefit from using MARTi to analyse your data.

package marti

(downloads) docker_marti

versions:

0.9.18-0,  0.9.16-0,  0.9.15-0,  0.9.14-0

depends blast:

>=2.12

depends nodejs:

>=14.17.5

depends openjdk:

>=16.0.2

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install marti

and update with::

   mamba update marti

To create a new environment, run:

mamba create --name myenvname marti

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/marti:<tag>

(see `marti/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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