recipe masurca

MaSuRCA (Maryland Super-Read Celera Assembler) genome assembly software. MaSuRCA requires Illumina data, and supports third-generation PacBio/Nanopore MinION reads for hybrid assembly.

Homepage:

http://masurca.blogspot.co.uk/

License:

GPL / GPL-3.0-only

Recipe:

/masurca/meta.yaml

Links:

biotools: masurca, doi: 10.1093/bioinformatics/btt476

package masurca

Versions:

4.0.9-1,  4.0.9-0,  4.0.8-1,  4.0.8-0,  4.0.7-1,  4.0.7-0,  4.0.6-0,  3.4.2-1,  3.4.2-0, 

4.0.9-1,  4.0.9-0,  4.0.8-1,  4.0.8-0,  4.0.7-1,  4.0.7-0,  4.0.6-0,  3.4.2-1,  3.4.2-0,  3.4.1-0,  3.4.0-0,  3.3.9-0,  3.3.8-0,  3.3.7-0,  3.3.6-0,  3.3.5-0,  3.3.4-0,  3.3.3-0,  3.3.1-0,  3.3.0-0,  3.2.9-0,  3.2.8-0,  3.2.7-0

Depends:

• boost-cpp >=1.74.0,<1.74.1.0a0

• bwa

• bzip2 >=1.0.8,<2.0a0

• grep

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.11,<1.3.0a0

• minimap2

• perl >=5.32.1,<5.33.0a0 *_perl5

• zlib >=1.2.11,<1.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install masurca

and update with:

conda update masurca

or use the docker container:

docker pull quay.io/biocontainers/masurca:<tag>

(see masurca/tags for valid values for <tag>)

Download stats

Link to this page

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