recipe masurca

MaSuRCA (Maryland Super-Read Celera Assembler) genome assembly software. MaSuRCA requires Illumina data, and supports third-generation PacBio/Nanopore MinION reads for hybrid assembly.

Homepage

http://masurca.blogspot.co.uk/

License

GPL / GPL-3.0-only

Recipe

/masurca/meta.yaml

Links

biotools: masurca, doi: 10.1093/bioinformatics/btt476

package masurca

Versions

3.4.2-0,  3.4.1-0,  3.4.0-0,  3.3.9-0,  3.3.8-0,  3.3.7-0,  3.3.6-0,  3.3.5-0,  3.3.4-0, 

3.4.2-0,  3.4.1-0,  3.4.0-0,  3.3.9-0,  3.3.8-0,  3.3.7-0,  3.3.6-0,  3.3.5-0,  3.3.4-0,  3.3.3-0,  3.3.1-0,  3.3.0-0,  3.2.9-0,  3.2.8-0,  3.2.7-0

Depends

• boost-cpp >=1.70.0,<1.70.1.0a0

• bzip2 >=1.0.8,<2.0a0

• grep

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• perl >=5.26.2,<5.26.3.0a0

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install masurca

and update with:

conda update masurca

or use the docker container:

docker pull quay.io/biocontainers/masurca:<tag>

(see masurca/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/masurca/README.html)