recipe mauve

Mauve is a system for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion

Homepage:

http://darlinglab.org/mauve/

Developer docs:

https://sourceforge.net/projects/mauve/

License:

GPL / GPL-2.0

Recipe:

/mauve/meta.yaml

package mauve

(downloads) docker_mauve

versions:

2.4.0.snapshot_2015_02_13-4,  2.4.0.snapshot_2015_02_13-3,  2.4.0.snapshot_2015_02_13-2,  2.4.0.snapshot_2015_02_13-1,  2.4.0.snapshot_2015_02_13-0,  2.4.0.r4736-3,  2.4.0.r4736-2,  2.4.0.r4736-1,  2.4.0.r4736-0

depends font-ttf-dejavu-sans-mono:

depends fontconfig:

depends mauvealigner:

depends openjdk:

8.0.192.*

depends xorg-libxi:

depends xorg-libxrender:

depends xorg-libxtst:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mauve

and update with::

   mamba update mauve

To create a new environment, run:

mamba create --name myenvname mauve

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mauve:<tag>

(see `mauve/tags`_ for valid values for ``<tag>``)

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Link to this page

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