recipe mavis

A Structural Variant Post-Processing Package

Homepage

https://github.com/bcgsc/mavis.git

Documentation

http://mavis.bcgsc.ca/docs/latest

License

OTHER / Non-commercial use only

Recipe

/mavis/meta.yaml

package mavis

Versions

2.2.6-0

Depends

• biopython >=1.70

• braceexpand 0.1.2

• colour

• distance >=0.1.3

• networkx 1.11.0

• numpy >=1.13.1

• pysam >=0.9

• python >=3

• pyvcf 0.6.8

• shapely >=1.6.4

• shortuuid >=0.5.0

• svgwrite

• ucsc-blat

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mavis

and update with:

conda update mavis

or use the docker container:

docker pull quay.io/biocontainers/mavis:<tag>

(see mavis/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mavis/README.html)