recipe maxbin2

MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm.

Homepage:

http://downloads.jbei.org/data/microbial_communities/MaxBin/MaxBin.html

License:

BSD 3-clause

Recipe:

/maxbin2/meta.yaml

package maxbin2

versions:

2.2.7-5,  2.2.7-4,  2.2.7-3,  2.2.7-2,  2.2.7-1,  2.2.7-0,  2.2.6-0,  2.2.4-1,  2.2.4-0, 

2.2.7-5,  2.2.7-4,  2.2.7-3,  2.2.7-2,  2.2.7-1,  2.2.7-0,  2.2.6-0,  2.2.4-1,  2.2.4-0,  2.2.1-1,  2.2.1-0

depends bowtie2:

depends fraggenescan:

>=1.30

depends hmmer:

depends idba:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends perl:

5.26.*

depends perl-lwp-simple:

depends r-base:

depends r-gplots:

depends tar:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install maxbin2

and update with::

   mamba update maxbin2

To create a new environment, run:

mamba create --name myenvname maxbin2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/maxbin2:<tag>

(see `maxbin2/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/maxbin2/README.html)