recipe maxbin2

MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm.

Homepage:

http://downloads.jbei.org/data/microbial_communities/MaxBin/MaxBin.html

License:

BSD 3-clause

Recipe:

/maxbin2/meta.yaml

package maxbin2

Versions:

2.2.7-4,  2.2.7-3,  2.2.7-2,  2.2.7-1,  2.2.7-0,  2.2.6-0,  2.2.4-1,  2.2.4-0,  2.2.1-1, 

2.2.7-4,  2.2.7-3,  2.2.7-2,  2.2.7-1,  2.2.7-0,  2.2.6-0,  2.2.4-1,  2.2.4-0,  2.2.1-1,  2.2.1-0

Depends:

• bowtie2

• fraggenescan >=1.30

• hmmer

• idba

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• perl 5.26.*

• perl-lwp-simple

• r-base

• r-gplots

• tar

Required By:

• unitem

• mosca

• metagem

• metawrap-mg

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install maxbin2

and update with:

conda update maxbin2

or use the docker container:

docker pull quay.io/biocontainers/maxbin2:<tag>

(see maxbin2/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/maxbin2/README.html)