- recipe maxbin2
MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm.
- package maxbin2¶
- depends bowtie2:
- depends fraggenescan:
- depends hmmer:
- depends idba:
- depends libgcc-ng:
- depends libstdcxx-ng:
- depends perl:
- depends perl-lwp-simple:
- depends r-base:
- depends r-gplots:
- depends tar:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install maxbin2 and update with:: mamba update maxbin2
To create a new environment, run:
mamba create --name myenvname maxbin2
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/maxbin2:<tag> (see `maxbin2/tags`_ for valid values for ``<tag>``)