recipe mdasim

This is MDAsim 2+, a tool to simulate whole genome amplification of a DNA sequence with multiple displacement amplification. A citation for this version will be provided when available. MDAsim 2+ extends MDAsim 1.2, so please also always cite: Tagliavi Z, Draghici S. MDAsim: A multiple displacement amplification simulator. 2012 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). 2012. pp. 1–4. doi:10.1109/BIBM.2012.6392622

Homepage:

https://github.com/hzi-bifo/mdasim

License:

GPL / GPL-3.0

Recipe:

/mdasim/meta.yaml

package mdasim

(downloads) docker_mdasim

versions:
2.1.1-6,  2.1.1-5,  2.1.1-4,  2.1.1-3,  2.1.1-2,  2.1.1-1,  2.1.1-0,  2.1.0-0,  2.0.1-1, 

2.1.1-6,  2.1.1-5,  2.1.1-4,  2.1.1-3,  2.1.1-2,  2.1.1-1,  2.1.1-0,  2.1.0-0,  2.0.1-1,  2.0.1-0,  2.0.0-0,  1.2-0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends openmpi:

>=4.1.6,<5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mdasim

and update with::

   mamba update mdasim

To create a new environment, run:

mamba create --name myenvname mdasim

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mdasim:<tag>

(see `mdasim/tags`_ for valid values for ``<tag>``)

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Link to this page

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