recipe mdmcleaner

A pipeline for the assessment, classification and refinement of microbial dark matter SAGs and MAGs

Homepage:

https://github.com/KIT-IBG-5/mdmcleaner

License:

GPL-3.0

Recipe:

/mdmcleaner/meta.yaml

package mdmcleaner

Versions:

0.8.7-0,  0.8.3-0,  0.8.2-0

Depends:

• aragorn >=1.2.38

• barrnap >=0.9

• biopython >=1.78

• blast >=2.10

• diamond >=2.0.6

• hmmer >=3.3.1

• numpy >=1.19.2

• prodigal >=2.6.3

• python >=3.7

• wget >=1.19

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mdmcleaner

and update with:

conda update mdmcleaner

or use the docker container:

docker pull quay.io/biocontainers/mdmcleaner:<tag>

(see mdmcleaner/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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