- recipe medicc2
Whole-genome doubling-aware copy number phylogenies for cancer evolution
- Homepage:
- License:
GPL-3
- Recipe:
For more information see the accompanying biorxiv preprint "Kaufmann et al. Whole-genome doubling-aware copy number phylogenies for cancer evolution with MEDICC2."
- package medicc2¶
-
- Versions:
0.8.3-0
,0.8.1-1
,0.8.1-0
,0.8.0-0
,0.7.1-0
,0.7.0-1
,0.7.0-0
,0.6b1-0
,0.5b4-0
,0.8.3-0
,0.8.1-1
,0.8.1-0
,0.8.0-0
,0.7.1-0
,0.7.0-1
,0.7.0-0
,0.6b1-0
,0.5b4-0
,0.5b3-0
- Depends:
biopython
>=1.78
joblib
>=1.0.1
libgcc-ng
>=12
libstdcxx-ng
>=12
matplotlib-base
>=3.3
numpy
>=1.20.1
numpy
>=1.21.6,<2.0a0
openfst
>=1.8.1,<1.8.2.0a0
pandas
>=1.2.2
python
>=3.7,<3.8.0a0
python_abi
3.7.* *_cp37m
pyyaml
>=5.4.1
scipy
>=1.7
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install medicc2
and update with:
conda update medicc2
or use the docker container:
docker pull quay.io/biocontainers/medicc2:<tag>
(see medicc2/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/medicc2/README.html)