recipe medicc2

Whole-genome doubling-aware copy number phylogenies for cancer evolution

Homepage:

https://bitbucket.org/schwarzlab/medicc2

License:

GPL-3

Recipe:

/medicc2/meta.yaml

For more information see the accompanying biorxiv preprint "Kaufmann et al. Whole-genome doubling-aware copy number phylogenies for cancer evolution with MEDICC2."

package medicc2

Versions:

0.8.3-0,  0.8.1-1,  0.8.1-0,  0.8.0-0,  0.7.1-0,  0.7.0-1,  0.7.0-0,  0.6b1-0,  0.5b4-0, 

0.8.3-0,  0.8.1-1,  0.8.1-0,  0.8.0-0,  0.7.1-0,  0.7.0-1,  0.7.0-0,  0.6b1-0,  0.5b4-0,  0.5b3-0

Depends:

• biopython >=1.78

• joblib >=1.0.1

• libgcc-ng >=12

• libstdcxx-ng >=12

• matplotlib-base >=3.3

• numpy >=1.20.1

• numpy >=1.21.6,<2.0a0

• openfst >=1.8.1,<1.8.2.0a0

• pandas >=1.2.2

• pyranges

• python >=3.7,<3.8.0a0

• python_abi 3.7.* *_cp37m

• pyyaml >=5.4.1

• scipy >=1.7

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install medicc2

and update with:

conda update medicc2

or use the docker container:

docker pull quay.io/biocontainers/medicc2:<tag>

(see medicc2/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/medicc2/README.html)