recipe memote

the genome-scale metabolic model test suite

Homepage:

https://memote.readthedocs.io/

License:

Apache-2.0

Recipe:

/memote/meta.yaml

package memote

versions:

0.17.0-0

depends click:

depends click-configfile:

depends click-log:

depends cobra:

>=0.28

depends cookiecutter:

depends depinfo:

>=2.2

depends future:

depends git:

depends gitpython:

depends importlib_resources:

depends jinja2:

depends jsonschema:

depends numpy:

depends numpydoc:

depends optlang:

>=1.8

depends pandas:

depends pandera:

depends pygithub:

<2

depends pylru:

depends pytest:

depends python:

>=3.9,<=3.11

depends requests:

depends ruamel.yaml:

depends six:

depends sqlalchemy:

depends sympy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install memote

and update with::

   mamba update memote

To create a new environment, run:

mamba create --name myenvname memote

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/memote:<tag>

(see `memote/tags`_ for valid values for ``<tag>``)

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Link to this page

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