recipe mercat

Mercat: a versatile counter and diversity estimator for data base independent property analysis obtained from whole community sequencing data.

Homepage:

https://github.com/pnnl/mercat

License:

BSD / BSD

Recipe:

/mercat/meta.yaml

package mercat

versions:

0.2-1,  0.2-0,  0.1-0

depends dask:

depends humanize:

depends joblib:

depends numpy:

depends pandas:

depends plotly:

depends prodigal:

depends psutil:

depends python:

depends scikit-bio:

0.2.3

depends trimmomatic:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mercat

and update with::

   mamba update mercat

To create a new environment, run:

mamba create --name myenvname mercat

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mercat:<tag>

(see `mercat/tags`_ for valid values for ``<tag>``)

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Link to this page

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